publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2024

  1. Patterns of chromosome evolution in ruminants
    Cristina Arias-Sardá, Sarah Quigley, and Marta Farré
    Molecular ecology, 2024
    DOI

2023

  1. A shared ‘vulnerability code’underpins varying sources of DNA damage throughout paternal germline transmission in mouse
    Frances Burden, Peter JI Ellis, and Marta Farré
    Nucleic Acids Research, 2023
    DOI
  2. syntenyPlotteR: a user-friendly R package to visualize genome synteny, ideal for both experienced and novice bioinformaticians
    Sarah Quigley, Joana Damas, Denis M Larkin, and 1 more author
    Bioinformatics Advances, 2023
    DOI

2022

  1. 3D chromatin remodelling in the germ line modulates genome evolutionary plasticity
    Lucı́a Álvarez-González, Frances Burden, Dadakhalandar Doddamani, and 8 more authors
    Nature communications, 2022
    DOI
  2. Novel mtDNA haplotypes represented in the European captive population of the Endangered François’ langur (Trachypithecus francoisi)
    Marta Farré, Cameron Johnstone, Jane Hopper, and 3 more authors
    International Journal of Primatology, 2022
    DOI
  3. Principles of 3D chromosome folding and evolutionary genome reshuffling in mammals
    Lucı́a Álvarez-González, Cristina Arias-Sardá, Laia Montes-Espuña, and 8 more authors
    Cell reports, 2022
    DOI
  4. Evolution of the ancestral mammalian karyotype and syntenic regions
    Joana Damas, Marco Corbo, Jaebum Kim, and 8 more authors
    Proceedings of the National Academy of Sciences, 2022
    DOI

2021

  1. Mitochondrial genome evolution, genetic diversity, and population structure in British water voles (Arvicola amphibius)
    Corey Kirkland and Marta Farré
    Genes, 2021
    DOI
  2. Identification of sequence changes in myosin II that adjust muscle contraction velocity
    Chloe A Johnson, Jake E McGreig, Sarah T Jeanfavre, and 8 more authors
    PLoS Biology, 2021
    DOI
  3. Mechanisms Driving Karyotype Evolution and Genomic Architecture
    Aurora Ruiz-Herrera and Marta Farré-Belmonte
    2021

2020

  1. The plasticity of genome architecture
    Marta Farré and Aurora Ruiz-Herrera
    2020

2019

  1. A near chromosome assembly of the dromedary camel genome
    Daniil Ruvinskiy, Denis M Larkin, and Marta Farré
    Frontiers in genetics, 2019
  2. A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert
    Marta Farré, Qiye Li, Yang Zhou, and 8 more authors
    Gigascience, 2019
  3. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks
    Marta Farré, Jaebum Kim, Anastasia A Proskuryakova, and 8 more authors
    Genome research, 2019
  4. Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers
    Iulia Darolti, Alison E Wright, Benjamin A Sandkam, and 8 more authors
    Proceedings of the National Academy of Sciences, 2019
  5. The red fox Y-chromosome in comparative context
    Halie M Rando, William H Wadlington, Jennifer L Johnson, and 4 more authors
    Genes, 2019
  6. An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi)
    Marta Farré, Qiye Li, Iulia Darolti, and 8 more authors
    GigaScience, 2019
  7. Comparative chromosome mapping of musk Ox and the X chromosome among some bovidae species
    Anastasia A Proskuryakova, Anastasia I Kulemzina, Polina L Perelman, and 8 more authors
    Genes, 2019

2018

  1. Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs
    Rebecca E O’Connor, Michael N Romanov, Lucas G Kiazim, and 7 more authors
    Nature communications, 2018
  2. Construction of red fox chromosomal fragments from the short-read genome assembly
    Halie M Rando, Marta Farré, Michael P Robson, and 8 more authors
    Genes, 2018
  3. Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro-and microchromosomes
    Joana Damas, Jaebum Kim, Marta Farré, and 2 more authors
    Genome biology, 2018
  4. Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes
    Rebecca E O’Connor, Marta Farré, Sunitha Joseph, and 8 more authors
    Genome Biology, 2018

2017

  1. Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set
    Joana Damas, Rebecca O’Connor, Marta Farré, and 8 more authors
    Genome research, 2017
  2. Reconstruction and evolutionary history of eutherian chromosomes
    Jaebum Kim, Marta Farré, Loretta Auvil, and 4 more authors
    Proceedings of the National Academy of Sciences, 2017
  3. The Japanese quail genome a cytogenetic revision
    Maria Kulak, Svetlana Galkina, Alsu Saifitdinova, and 7 more authors
    In MOLECULAR CYTOGENETICS, 2017
  4. X chromosome evolution in Cetartiodactyla
    Anastasia A Proskuryakova, Anastasia I Kulemzina, Polina L Perelman, and 8 more authors
    Genes, 2017

2016

  1. Novel insights into chromosome evolution in birds, archosaurs, and reptiles
    Marta Farre, Jitendra Narayan, Gancho T Slavov, and 7 more authors
    Genome biology and evolution, 2016
  2. Synteny explorer: an interactive visualization application for teaching genome evolution
    Chris Bryan, Gregory Guterman, Kwan-Liu Ma, and 5 more authors
    IEEE transactions on visualization and computer graphics, 2016
  3. Mammalian comparative genomics reveals genetic and epigenetic features associated with genome reshuffling in Rodentia
    Laia Capilla, Rosa Ana Sanchez-Guillen, Marta Farre, and 5 more authors
    Genome biology and evolution, 2016

2015

  1. Cytogenetics and chromosome maps.
    Denis M Larkin and Marta Farré
    In The genetics of cattle, 2015
  2. An Integrative Breakage Model of genome architecture, reshuffling and evolution: The Integrative Breakage Model of genome evolution, a novel multidisciplinary hypothesis for the study of genome plasticity
    Marta Farré, Terence J Robinson, and Aurora Ruiz-Herrera
    Bioessays, 2015
  3. Third Report on Chicken Genes and Chromosomes 2015Prepared by
    Michael Schmid, Jacqueline Smith, David W Burt, and 8 more authors
    Cytogenetic and genome research, 2015
  4. Population structure and history of the Welsh sheep breeds determined by whole genome genotyping
    Sarah E Beynon, Gancho T Slavov, Marta Farré, and 8 more authors
    BMC genetics, 2015

2014

  1. Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa
    Zheng Wang, Francesc Lopez-Giraldez, Nina Lehr, and 4 more authors
    Eukaryotic cell, 2014
  2. Role of Chromosomal Reorganisations in the Human–Chimpanzee Speciation
    Marta Farré and Aurora Ruiz-Herrera
    eLS, 2014
  3. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor
    Michael N Romanov, Marta Farré, Pamela E Lithgow, and 8 more authors
    BMC genomics, 2014
  4. Unraveling the effect of genomic structural changes in the rhesus macaque-implications for the adaptive role of inversions
    Anna Ullastres, Marta Farré, Laia Capilla, and 1 more author
    BMC genomics, 2014
  5. Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax
    Xiaodong Fang, Eviatar Nevo, Lijuan Han, and 8 more authors
    Nature communications, 2014
  6. Comparative genomics reveals insights into avian genome evolution and adaptation
    Guojie Zhang, Cai Li, Qiye Li, and 8 more authors
    Science, 2014

2013

  1. Recombination rates and genomic shuffling in human and chimpanzee—a new twist in the chromosomal speciation theory
    Marta Farré, Diego Micheletti, and Aurora Ruiz-Herrera
    Molecular Biology and Evolution, 2013
  2. Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference
    Joana Segura, Luca Ferretti, Sebastián Ramos-Onsins, and 8 more authors
    Proceedings of the Royal Society B: Biological Sciences, 2013

2012

  1. Molecular cytogenetic and genomic insights into chromosomal evolution
    Aurora Ruiz-Herrera, Marta Farré, and TJ Robinson
    Heredity, 2012

2011

  1. Assessing the role of tandem repeats in shaping the genomic architecture of great apes
    Marta Farré, Montserrat Bosch, Francesc López-Giráldez, and 2 more authors
    PLoS One, 2011

2010

  1. Selection against Robertsonian fusions involving housekeeping genes in the house mouse: integrating data from gene expression arrays and chromosome evolution
    Aurora Ruiz-Herrera, Marta Farré, Montserrat Ponsà, and 1 more author
    Chromosome research, 2010

2009

  1. Interstitial telomeric sequences (ITSs) are not located at the exact evolutionary breakpoints in primates
    Marta Farré, Montserrat Ponsa, and Montserrat Bosch
    Cytogenetic and Genome Research, 2009